Set Up & Manage ShipStation Internal Inventory

Use ShipStation’s internal inventory tools to track stock levels and keep your shipping operations organized. This article will guide you through how to set up inventory warehouses, link them to Ship From Locations, and manage your product stock within ShipStation.

ShipStation Inventory includes a variety of features to help you tailor your shipping and inventory workflow, such as:

Set Up Internal Inventory

Set up internal inventory in ShipStation and start tracking your stock levels.

Step 1: Set Your Inventory Preferences

To set your inventory preferences:

  1. Click Inventory Management > Inventory Settings.

    Settings Sidebar. Inventory Management dropdown: Red box highlights Inventory Settings option.
  2. Click Edit in the Configuration section.

    SET__SB__INVMGT__InventorySettings_ConfigurationSection.png
  3. Update your preferences as needed, then click Save.

    SET__SB__INVMGT__InventorySettings_ConfigurationSection_SaveBTTN.png

Step 2: Add Inventory Warehouse

For ShipStation to track your stock levels, you need to create at least one Inventory Warehouse and link it as an Inventory source to one of your Ship From Locations. Think of this as the physical location where you store your inventory.

You can also configure your Inventory Warehouse to mirror your actual warehouse layout (for example, if your warehouse is separated into aisles, rows, and bins). By adding Locations, you can have ShipStation show specifically where each item is located (for example, Toy A is located in B-24-7).

Step 3: Link a Ship From Location to your Warehouses

Ship From Location Requirement

To link a Ship From Location, you’ll first need to create a Ship From Location.

A Ship From Location includes:

  • The shipment origin address

  • The return address

This information is required to receive accurate rates from shipping carriers.

Confirm Shipped From Location is Linked

There are two ways to confirm that your Shipped From Location is linked.

  1. Go to Settings > Inventory Management > Inventory Warehouses, and look for a checkmark in the Linked to Ship From column. This checkmark indicates that the warehouse is linked to a Ship From Location.

    Inventory Warehouse Layout. Red arrow points to Edit action. Yellow highlights Linked to Ship From
  2. Go to Settings > Inventory Management > Inventory Warehouses. Click the Actions menu next to the warehouse, then click Edit. You’ll see a list of all Linked Ship From Locations that use this Inventory Warehouse as an inventory source.

    Inventory Warehouse popup. Red arrow points to Linked "ShipFrom Locations"

Manage Internal Inventory

Once your internal inventory is set up, ShipStation provides tools to help you track, organize, and maintain accurate stock levels. This section covers how to manage your inventory settings to enable key features, update stock counts, and optimize your warehouse layout to support efficient order fulfillment.

General Inventory Setting

Access general inventory settings by going to: Settings > Inventory Management > Inventory Settings.

ShipStation's Inventory Settings

These settings control how ShipStation handles inventory behavior across your account.

General Configuration Settings

  • Handling Out-of-Stock or Unknown Inventory Levels: Choose how ShipStation should respond when an order includes items that are either out of stock or have an unknown stock level (e.g., Allow the shipment as usual, Allow with Warning, Block the shipment entirely).

    Blocking a shipment will prevent ShipStation from generating a label for any order that contains an out-of-stock item.

  • Shipping From a Location That Does Not Track Inventory: If you ship from a warehouse or location that does not track inventory, you can have ShipStation display a warning. This warning will let you know that the product's inventory count will not be adjusted.

  • Low Stock Alerts: Enable alerts when a product’s inventory falls below a threshold you define. You can also override this global setting by specifying a custom Reorder Threshold on individual products.

  • Inventory Tracking Toggle: If Enable Inventory Tracking is turned off, ShipStation will ignore all inventory settings and stock levels across the platform.

ShipStation offers additional tools to help you manage your inventory more effectively—see the sections below for advanced options.

Set Your Initial Stock Levels

Before ShipStation can track inventory as you ship, you’ll need to set your initial stock counts. The best way to do this is by uploading a CSV file formatted with your stock levels and inventory locations.

To learn more, visit Set Your Initial Stock Counts.

Enable Inventory Tracking

To have ShipStation automatically deduct stock as you ship orders, you’ll need to enable inventory tracking for your products. You can turn this setting on either before or after entering your initial stock levels.

Enable Inventory Sync

Inventory Sync helps keep your stock levels accurate across connected platforms by automatically updating inventory as orders are shipped or restocked.

To learn more, visit Enable Inventory Sync.

View Internal Inventory Stock Counts

You can view your inventory stock levels at the product level, the order level, and in the shipping sidebar.

To learn more, visit View Internal Inventory Stock Counts.

Add Inventory Locations

Update Warehouse Layouts

Enable 'Do Not Track' Option

Enable 'Do Not Track Inventory' from the Products page to prevent ShipStation from tracking inventory for specific products that don’t require inventory management, such as:

  • Coupons or promotional items

  • Free samples

  • Seasonal or occasional products

  • Limited-edition or one-time-only items

When enabled, ShipStation will:

  • Exclude the product from inventory and insight reports.

  • Disable inventory actions like stock allocation, reorder alerts, and blocking shipments due to zero stock.

To enable 'Do Not Track':

  1. Select the product(s) you want to update to open the Product Details page.

  2. Check the box labeled Do Not Track Inventory.

  3. Click Save Changes.

Inventory User Permissions & Restrictions

Your ShipStation account User Management Settings include some inventory-specific permissions and restrictions.

Admin users can go to Settings > Account > User Management and click Edit to modify these permissions for any user.

  • Permissions: For non-admin users, check the Inventory Management box to give the user permission to add, move, and remove inventory, allocate and deallocate inventory for an order, or set up allocation strategies.

    SET_ACCT_UserMgmt_InvPermission_MRK.png
  • Restrictions: Enabling this option disables the Allocate, Allocate By, and Deallocate buttons for the user. The user can view inventory data, but cannot modify it.

    SET_ACCT_UserMgmt_InvRestriction_MRK.png

Add Inventory Locations to Packing Slips

Print a product's Inventory Locations (from the Product Details > Inventory > Location field) on packing slips to ensure you are always picking and packing the right item from the right location.

V3 Inventory tab with location column highlighted.

You can add the product's Inventory Location to both your default packing slip and custom packing slips, as described in the steps below.

Three things to note about this feature:

  • Enable Inventory Tracking must be set to active in Settings > Inventory Management > Inventory Settings.

  • Items must be allocated in the order to print on the packing slip successfully.

    ShipStation automatically allocates items for a shipment when you print the packing slip, but if you preview the packing slip prior to printing, the preview will display unallocated in the item location section.

  • If you have more than one warehouse in your product's inventory list, ShipStation will always print the first Location in this list on the packing slip (as this is where inventory deducts from by default).

Add Inventory Location to the Default Packing Slip

The default packing slip template in ShipStation now includes the Inventory Location value in the Order Items table, if you have enabled the corresponding packing slip document option.

Here is how this information will appear on the default packing slip:

Custom packing slip with example inventory location "17-B-2-a" highlighted in Location column.

Not Available in ShipStation Legacy

You cannot enable or disable the setting while in ShipStation Legacy Layout.

Add Inventory Location to Custom Packing Slips

If you have custom packing slip templates, you can add the product's Inventory Location information to the Order Items section of the template using a new field replacement, [Product Location].

Requires HTML

Packing slip templates require some basic HTML knowledge. 

ShipStation does not provide custom HTML assistance. Our support team is available to troubleshoot, but they do not provide design or consultation services. Visit our user forum for custom template help from other ShipStation users.

The example below will illustrate adding a column to the Order Items table in a template so it prints the [Product Location].

Custom Packing Slip Example

In this example, we'll add a column to the right of the SKU column in the Order Items table to hold the Inventory Location information.

Location column highlighted in red box on example packing slip, with sample warehouse location "17-B-2-a"

And that's it! Any order that uses this packing slip and has its items allocated will now print the product's Inventory Location.

Notes about the [Product Location] Field Replacement

  • The [Product Location] field replacement is not available in ShipStation's Legacy Layout.

  • The [Product Location] field replacement can only be used in the Order Items section of the packing slip template since it is item- level information. If you add to any other section it will not function as a field replacement and will simply print as plain text on your packing slip.

  • The Location field in the Product Details follows the layout you set in your Inventory Warehouse settings, located in Settings > Inventory Management > Inventory Warehouse > Manage Locations. This example includes Area, Unit, Shelf, and Bin, but your layout may differ.

Was this article helpful?
0 out of 0 found this helpful

Can’t find what you’re looking for?

Contact our technical support team.
Contact us